GNU bug report logs -
#30282
Julia 0.6.0 fails tests
Previous Next
To add a comment to this bug, you must first unarchive it, by sending
a message to control AT debbugs.gnu.org, with unarchive 30282 in the body.
You can then email your comments to 30282 AT debbugs.gnu.org in the normal way.
Toggle the display of automated, internal messages from the tracker.
Report forwarded
to
bug-guix <at> gnu.org
:
bug#30282
; Package
guix
.
(Sun, 28 Jan 2018 23:44:02 GMT)
Full text and
rfc822 format available.
Acknowledgement sent
to
Marco van Hulten <marco <at> hulten.org>
:
New bug report received and forwarded. Copy sent to
bug-guix <at> gnu.org
.
(Sun, 28 Jan 2018 23:44:02 GMT)
Full text and
rfc822 format available.
Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):
Hi—
Building julia ends like badly:
$ guix package -i julia
[...]
base64 (2) | 0.41 | 0.00 | 0.0 | 2.10 | 1559.96
serialize (2) | 7.05 | 0.29 | 4.1 | 80.75 | 1559.96
WARNING: readuntil(IO,AbstractString) will perform poorly with a long string
WARNING: readuntil(IO,AbstractString) will perform poorly with a long string
WARNING: readuntil(IO,AbstractString) will perform poorly with a long string
Warning: threaded loop executed in order
threads (3) | 12.18 | 1.90 | 15.6 | 93.54 | 1708.66
enums (3) | 12.64 | 0.41 | 3.2 | 147.02 | 1708.66
i18n (3) | 0.06 | 0.00 | 0.0 | 0.07 | 1708.66
workspace (3) | 6.38 | 0.00 | 0.0 | 4.33 | 1708.66
sh: /sbin/ldconfig: No such file or directory
libdl (3) | 2.77 | 0.00 | 0.0 | 10.04 | 1708.66
int (3) | 9.51 | 0.19 | 2.0 | 29.06 | 1708.66
misc (2) | 68.30 | 9.99 | 14.6 | 1734.26 | 1654.81
intset (2) | 4.31 | 0.14 | 3.3 | 29.06 | 1654.81
checked (3) | 9.04 | 0.14 | 1.6 | 51.62 | 1708.66
floatfuncs (2) | 12.98 | 0.34 | 2.6 | 117.90 | 1654.81
inline (2) | 10.71 | 0.13 | 1.2 | 40.40 | 1654.81
boundscheck (2) | 24.83 | 0.00 | 0.0 | 8.59 | 1654.81
error (2) | 7.12 | 2.34 | 32.9 | 7.45 | 1654.81
cartesian (2) | 0.07 | 0.00 | 0.0 | 0.05 | 1654.81
asmvariant (2) | 0.29 | 0.00 | 0.0 | 0.54 | 1654.81
osutils (2) | 0.10 | 0.00 | 0.0 | 0.25 | 1654.81
channels (2) | 32.41 | 12.07 | 37.2 | 456.26 | 1654.81
iostream (2) | 1.04 | 0.00 | 0.0 | 2.89 | 1654.81
WARNING: Method definition f(Tuple{Vararg{Int64, N}}, AbstractArray{T, N}) in module Test51Main_specificity at /tmp/guix-build-julia-0.6.0.drv-0/julia-0.6.0/test/specificity.jl:87 overwritten at /tmp/guix-build-julia-0.6.0.drv-0/julia-0.6.0/test/specificity.jl:93.
specificity (2) | 0.29 | 0.00 | 0.0 | 0.84 | 1654.81
fft (2) | 61.87 | 1.68 | 2.7 | 541.40 | 1654.81
dsp (2) | 19.35 | 0.99 | 5.1 | 245.84 | 1654.81
EOFError()CapturedExceptionEOFError(()CapturedException(EOFError()CapturedException(EOFError(EOFError()), EOFError(), , Any[Any[(Any[(((::Base.Distributed.##99#100{TCPSocket,TCPSocket,Bool})() at event.jl:73, 1)])
Process(33) - Unknown remote, closing connection.
(::Base.Distributed.##99#100{TCPSocket,TCPSocket,Bool})(::Base.Distributed.##99#100{TCPSocket,TCPSocket,Bool})() at event.jl:73, 1)])
Process(29) - Unknown remote, closing connection.
() at event.jl:73, 1)])
Process(31) - Unknown remote, closing connection.
EOFError()CapturedException(EOFError()EOFError()CapturedException(EOFErrorCapturedException((), EOFErrorEOFError(()), , Any[AnyAny[[(EOFError()CapturedException(EOFError(), Any[((::Base.Distributed.##99#100{TCPSocket,TCPSocket,Bool})() at event.jl:73, 1)])
Process(31) - Unknown remote, closing connection.
EOFError()CapturedException(EOFError(), Any[((::Base.Distributed.##99#100{TCPSocket,TCPSocket,Bool})() at event.jl:73, 1)])
Process(33) - Unknown remote, closing connection.
(((::Base.Distributed.##99#100{TCPSocket,TCPSocket,Bool})() at event.jl:73, (::Base.Distributed.##99#100{TCPSocket,TCPSocket,Bool})1)])
Process(34) - Unknown remote, closing connection.
(::Base.Distributed.##99#100{TCPSocket,TCPSocket,Bool})() at event.jl:73, 1)])
Process(30) - Unknown remote, closing connection.
() at event.jl:73, 1)])
Process(32) - Unknown remote, closing connection.
EOFError()CapturedException(EOFError(), Any[((::Base.Distributed.##99#100{TCPSocket,TCPSocket,Bool})() at event.jl:73, 1)])
Process(32) - Unknown remote, closing connection.
EOFError()CapturedException(EOFError(), Any[((::Base.Distributed.##99#100{TCPSocket,TCPSocket,Bool})() at event.jl:73, 1)])
Process(34) - Unknown remote, closing connection.
EOFError()CapturedException(EOFError(), Any[((::Base.Distributed.##99#100{TCPSocket,TCPSocket,Bool})() at event.jl:73, 1)])
Process(33) - Unknown remote, closing connection.
EOFError()CapturedException(EOFError(), Any[((::Base.Distributed.##99#100{TCPSocket,TCPSocket,Bool})() at event.jl:73, 1)])
Process(34) - Unknown remote, closing connection.
distributed (3) | 190.79 | 0.00 | 0.0 | 1.01 | 1708.66
examples (2) | 31.02 | 1.51 | 4.9 | 617.02 | 1654.81
ERROR: LoadError: rmprocs: pids [3] not terminated after 30 seconds.
Stacktrace:
[1] _rmprocs(::Array{Int64,1}, ::Int64) at ./distributed/cluster.jl:807
[2] #rmprocs#70(::Int64, ::Function, ::Array{Int64,1}, ::Vararg{Array{Int64,1},N} where N) at ./distributed/cluster.jl:775
[3] (::##40#46)() at /tmp/guix-build-julia-0.6.0.drv-0/julia-0.6.0/test/runtests.jl:93
[4] cd(::##40#46, ::String) at ./file.jl:70
while loading /tmp/guix-build-julia-0.6.0.drv-0/julia-0.6.0/test/runtests.jl, in expression starting on line 29
make[1]: *** [Makefile:18: all] Error 1
make: *** [Makefile:558: test] Error 2
phase `check' failed after 2266.9 seconds
builder for `/gnu/store/zkx3jjnqg043yd3k2kl3lgw57rx39vmy-julia-0.6.0.drv' failed with exit code 1
guix package: error: build failed: build of
`/gnu/store/zkx3jjnqg043yd3k2kl3lgw57rx39vmy-julia-0.6.0.drv' failed
One issue seems that /sbin/ldconfig does not exist; this is provided
differently in GuixSD compared to most GNU distros. The critical
problem appears to be at event.jl:73.
—Marco
Information forwarded
to
bug-guix <at> gnu.org
:
bug#30282
; Package
guix
.
(Tue, 06 Feb 2018 16:05:01 GMT)
Full text and
rfc822 format available.
Message #8 received at 30282 <at> debbugs.gnu.org (full text, mbox):
Hi,
Marco van Hulten <marco <at> hulten.org> skribis:
> $ guix package -i julia
> [...]
[...]
> EOFError()CapturedExceptionEOFError(()CapturedException(EOFError()CapturedException(EOFError(EOFError()), EOFError(), , Any[Any[(Any[(((::Base.Distributed.##99#100{TCPSocket,TCPSocket,Bool})() at event.jl:73, 1)])
> Process(33) - Unknown remote, closing connection.
> (::Base.Distributed.##99#100{TCPSocket,TCPSocket,Bool})(::Base.Distributed.##99#100{TCPSocket,TCPSocket,Bool})() at event.jl:73, 1)])
> Process(29) - Unknown remote, closing connection.
> () at event.jl:73, 1)])
> Process(31) - Unknown remote, closing connection.
> EOFError()CapturedException(EOFError()EOFError()CapturedException(EOFErrorCapturedException((), EOFErrorEOFError(()), , Any[AnyAny[[(EOFError()CapturedException(EOFError(), Any[((::Base.Distributed.##99#100{TCPSocket,TCPSocket,Bool})() at event.jl:73, 1)])
> Process(31) - Unknown remote, closing connection.
> EOFError()CapturedException(EOFError(), Any[((::Base.Distributed.##99#100{TCPSocket,TCPSocket,Bool})() at event.jl:73, 1)])
> Process(33) - Unknown remote, closing connection.
> (((::Base.Distributed.##99#100{TCPSocket,TCPSocket,Bool})() at event.jl:73, (::Base.Distributed.##99#100{TCPSocket,TCPSocket,Bool})1)])
> Process(34) - Unknown remote, closing connection.
> (::Base.Distributed.##99#100{TCPSocket,TCPSocket,Bool})() at event.jl:73, 1)])
> Process(30) - Unknown remote, closing connection.
> () at event.jl:73, 1)])
> Process(32) - Unknown remote, closing connection.
> EOFError()CapturedException(EOFError(), Any[((::Base.Distributed.##99#100{TCPSocket,TCPSocket,Bool})() at event.jl:73, 1)])
> Process(32) - Unknown remote, closing connection.
> EOFError()CapturedException(EOFError(), Any[((::Base.Distributed.##99#100{TCPSocket,TCPSocket,Bool})() at event.jl:73, 1)])
> Process(34) - Unknown remote, closing connection.
> EOFError()CapturedException(EOFError(), Any[((::Base.Distributed.##99#100{TCPSocket,TCPSocket,Bool})() at event.jl:73, 1)])
> Process(33) - Unknown remote, closing connection.
> EOFError()CapturedException(EOFError(), Any[((::Base.Distributed.##99#100{TCPSocket,TCPSocket,Bool})() at event.jl:73, 1)])
> Process(34) - Unknown remote, closing connection.
> distributed (3) | 190.79 | 0.00 | 0.0 | 1.01 | 1708.66
> examples (2) | 31.02 | 1.51 | 4.9 | 617.02 | 1654.81
> ERROR: LoadError: rmprocs: pids [3] not terminated after 30 seconds.
> Stacktrace:
> [1] _rmprocs(::Array{Int64,1}, ::Int64) at ./distributed/cluster.jl:807
> [2] #rmprocs#70(::Int64, ::Function, ::Array{Int64,1}, ::Vararg{Array{Int64,1},N} where N) at ./distributed/cluster.jl:775
> [3] (::##40#46)() at /tmp/guix-build-julia-0.6.0.drv-0/julia-0.6.0/test/runtests.jl:93
> [4] cd(::##40#46, ::String) at ./file.jl:70
> while loading /tmp/guix-build-julia-0.6.0.drv-0/julia-0.6.0/test/runtests.jl, in expression starting on line 29
> make[1]: *** [Makefile:18: all] Error 1
The test failures I have with current master are different:
--8<---------------cut here---------------start------------->8---
Error in testset distributed:
Error During Test
Got an exception of type LoadError outside of a @test
LoadError: Distributed test failed, cmd : `/tmp/guix-build-julia-0.6.0.drv-0/julia-0.6.0/usr/bin/julia --check-bounds=yes --startup-file=no --depwarn=error distributed_exec.jl`
while loading /tmp/guix-build-julia-0.6.0.drv-0/julia-0.6.0/test/distributed.jl, in expression starting on line 9
Error in testset libgit2:
Test Failed
Expression: startswith(sprint(show, e), "GitError(Code:ENOTFOUND, Class:OS, Failed to resolve path")
Error in testset libgit2:
Test Failed
Expression: err.msg == "Invalid Content-Type: text/plain"
Evaluated: "invalid Content-Type: text/plain" == "Invalid Content-Type: text/plain"
ERROR: LoadError: Test run finished with errors
while loading /tmp/guix-build-julia-0.6.0.drv-0/julia-0.6.0/test/runtests.jl, in expression starting on line 29
make[1]: *** [Makefile:18: all] Error 1
make: *** [Makefile:558: test] Error 2
phase `check' failed after 1300.8 seconds
--8<---------------cut here---------------end--------------->8---
I fixed the libgit2 errors and got rid of the ldconfig warnings we had:
9805ad6f8 * gnu: julia: Don't invoke /sbin/ldconfig.
d40b5684c * gnu: julia: Adjust libgit2 tests.
However I now get another test failure:
--8<---------------cut here---------------start------------->8---
Error in testset linalg/arnoldi:
Test Failed
Expression: sort((eigs(A, B, nev=k, sigma=1.0))[1]) ≈ sort((eigvals(A, B))[1:k])
Evaluated: [0.022743, 0.165356, 2.892] ≈ [0.022743, 2.892, 1.0574e15]
ERROR: LoadError: Test run finished with errors
while loading /tmp/guix-build-julia-0.6.0.drv-0/julia-0.6.0/test/runtests.jl, in expression starting on line 29
make[1]: *** [Makefile:18: all] Error 1
--8<---------------cut here---------------end--------------->8---
Thoughts? :-)
Ludo’.
Information forwarded
to
bug-guix <at> gnu.org
:
bug#30282
; Package
guix
.
(Wed, 07 Feb 2018 11:57:02 GMT)
Full text and
rfc822 format available.
Message #11 received at 30282 <at> debbugs.gnu.org (full text, mbox):
Hello,
just for reference, I locally updated julia to 0.6.2, and the tests still fail,
but not in the same way:
Error in testset linalg/arnoldi:
Test Failed
Expression: sort((eigs(A, B, nev=k, sigma=1.0))[1]) ≈ sort((eigvals(A, B))[1:k])
Evaluated: [0.022743, 0.165356, 2.892] ≈ [0.022743, 2.892, 1.0574e15]
Error in testset misc:
Error During Test
Got an exception of type LoadError outside of a @test
LoadError: Deprecation test failed, cmd : `/tmp/guix-build-julia-0.6.2.drv-0/julia-0.6.2/usr/bin/julia --check-bounds=yes --startup-file=no deprecation_exec.jl`
while loading /tmp/guix-build-julia-0.6.2.drv-0/julia-0.6.2/test/misc.jl, in expression starting on line 717
ERROR: LoadError: Test run finished with errors
while loading /tmp/guix-build-julia-0.6.2.drv-0/julia-0.6.2/test/runtests.jl, in expression starting on line 29
Andreas
Changed bug title to 'Julia 0.6.0 fails tests' from 'package julia build error'
Request was from
ludo <at> gnu.org (Ludovic Courtès)
to
control <at> debbugs.gnu.org
.
(Thu, 08 Mar 2018 09:27:02 GMT)
Full text and
rfc822 format available.
Information forwarded
to
bug-guix <at> gnu.org
:
bug#30282
; Package
guix
.
(Mon, 12 Mar 2018 15:11:01 GMT)
Full text and
rfc822 format available.
Message #16 received at 30282 <at> debbugs.gnu.org (full text, mbox):
Hello,
ludo <at> gnu.org (Ludovic Courtès) skribis:
> Error in testset linalg/arnoldi:
> Test Failed
> Expression: sort((eigs(A, B, nev=k, sigma=1.0))[1]) ≈ sort((eigvals(A, B))[1:k])
> Evaluated: [0.022743, 0.165356, 2.892] ≈ [0.022743, 2.892, 1.0574e15]
> ERROR: LoadError: Test run finished with errors
> while loading /tmp/guix-build-julia-0.6.0.drv-0/julia-0.6.0/test/runtests.jl, in expression starting on line 29
> make[1]: *** [Makefile:18: all] Error 1
Commit c0edb5b5430a5278a3ebc9aeea9d3c8ae9a2e1f1 fixes this one.
Now for other test failures:
--8<---------------cut here---------------start------------->8---
Error in testset distributed:
Error During Test
Got an exception of type LoadError outside of a @test
LoadError: Distributed test failed, cmd : `/tmp/guix-build-julia-0.6.0.drv-0/julia-0.6.0/usr/bin/julia --check-bounds=yes --startup-file=no --depwarn=error distributed_exec.jl`
while loading /tmp/guix-build-julia-0.6.0.drv-0/julia-0.6.0/test/distributed.jl, in expression starting on line 9
ERROR: LoadError: Test run finished with errors
while loading /tmp/guix-build-julia-0.6.0.drv-0/julia-0.6.0/test/runtests.jl, in expression starting on line 29
make[1]: *** [Makefile:18: all] Error 1
--8<---------------cut here---------------end--------------->8---
Help welcome!
Ludo’.
Information forwarded
to
bug-guix <at> gnu.org
:
bug#30282
; Package
guix
.
(Tue, 13 Mar 2018 10:02:02 GMT)
Full text and
rfc822 format available.
Message #19 received at 30282 <at> debbugs.gnu.org (full text, mbox):
> Help welcome!
I'll take a look.
Pj.
--
Information forwarded
to
bug-guix <at> gnu.org
:
bug#30282
; Package
guix
.
(Tue, 13 Mar 2018 12:03:01 GMT)
Full text and
rfc822 format available.
Message #22 received at 30282 <at> debbugs.gnu.org (full text, mbox):
One immediate problem is that Julia comes with patches for LLVM 3.9
only:
https://github.com/JuliaLang/julia#llvm
it downloads, patches and compiles a specific LLVM. We actually need
this even though the failing tests are possibly not related (I suspect
the math libraries are not showing the same results as the built-in
ones).
I think we need to follow the recommended build steps for Julia first.
Then the tests should pass. Next perhaps link out components and send
bug reports upstream.
Pj.
Information forwarded
to
bug-guix <at> gnu.org
:
bug#30282
; Package
guix
.
(Tue, 13 Mar 2018 17:03:01 GMT)
Full text and
rfc822 format available.
Message #25 received at 30282 <at> debbugs.gnu.org (full text, mbox):
[Message part 1 (text/plain, inline)]
Hi Pjotr,
Pjotr Prins <pjotr.public12 <at> thebird.nl> skribis:
> One immediate problem is that Julia comes with patches for LLVM 3.9
> only:
>
> https://github.com/JuliaLang/julia#llvm
>
> it downloads, patches and compiles a specific LLVM. We actually need
> this even though the failing tests are possibly not related (I suspect
> the math libraries are not showing the same results as the built-in
> ones).
Oh, indeed.
For arpack-ng using the right version did help. It might be similar for
other dependencies.
I tried the patch below (README.md in Julia 0.6.0 says that plain LLVM
3.9 without patches is OK), but that didn’t solve the
distributed.jl-related test failures.
> I think we need to follow the recommended build steps for Julia first.
> Then the tests should pass. Next perhaps link out components and send
> bug reports upstream.
Yeah, though we’d rather extract these bundled pieces somehow.
Thanks,
Ludo’.
[Message part 2 (text/x-patch, inline)]
diff --git a/gnu/packages/julia.scm b/gnu/packages/julia.scm
index 41bbc66dd..8e5e81314 100644
--- a/gnu/packages/julia.scm
+++ b/gnu/packages/julia.scm
@@ -314,7 +314,7 @@
"USE_SYSTEM_LIBGIT2=1"
"USE_SYSTEM_OPENSPECFUN=1")))
(inputs
- `(("llvm" ,llvm)
+ `(("llvm" ,llvm-3.9.1)
("arpack-ng" ,arpack-ng)
("coreutils" ,coreutils) ;for bindings to "mkdir" and the like
("lapack" ,lapack)
Information forwarded
to
bug-guix <at> gnu.org
:
bug#30282
; Package
guix
.
(Tue, 13 Mar 2018 17:55:02 GMT)
Full text and
rfc822 format available.
Message #28 received at 30282 <at> debbugs.gnu.org (full text, mbox):
Hello,
On Tue, Mar 13, 2018 at 06:02:07PM +0100, Ludovic Courtès wrote:
> I tried the patch below (README.md in Julia 0.6.0 says that plain LLVM
> 3.9 without patches is OK), but that didn’t solve the
> distributed.jl-related test failures.
there is a 0.6.2 version already. I do not expect it to solve test failures,
but it might make sense to try an update first.
Andreas
Information forwarded
to
bug-guix <at> gnu.org
:
bug#30282
; Package
guix
.
(Tue, 13 Mar 2018 21:41:02 GMT)
Full text and
rfc822 format available.
Message #31 received at 30282 <at> debbugs.gnu.org (full text, mbox):
On Tue, Mar 13, 2018 at 06:54:18PM +0100, Andreas Enge wrote:
> Hello,
>
> On Tue, Mar 13, 2018 at 06:02:07PM +0100, Ludovic Courtès wrote:
> > I tried the patch below (README.md in Julia 0.6.0 says that plain LLVM
> > 3.9 without patches is OK), but that didn’t solve the
> > distributed.jl-related test failures.
>
> there is a 0.6.2 version already. I do not expect it to solve test failures,
> but it might make sense to try an update first.
I am on 0.6.2. Not sure where it will end. Starting to appreciate
Julia a little (as a language, not as a deployment). It is a fast LISP
with Ruby syntax ;)
Pj.
--
Information forwarded
to
bug-guix <at> gnu.org
:
bug#30282
; Package
guix
.
(Fri, 16 Mar 2018 14:13:02 GMT)
Full text and
rfc822 format available.
Message #34 received at 30282 <at> debbugs.gnu.org (full text, mbox):
After some investigation I have found Julia's build system to be a
challenge. The problem is that, to 'control' the environment, the
developers have chosen to fixate all dependencies by pulling them in
and patching them (including LLVM). The only time I got a successful
build outside Guix was by using the exact gcc/g++/gfortran-4.7
compilers (no earlier and no later versions) and letting Julia have
its way downloading and building openblas, etc. All Julia tests pass
if it is done this way.
I tried to build Julia in a Guix environment - adding dependencies one
by one - and this failed spectularly too. Turns out that Julia is very
specific about the compilers and dependencies it uses, which is OK,
but it downloads dependencies from source and patches them, which is
not great. Worst, the whole build system is based on defaults - so if
you change anything things start failing.
I.e., you try to change anything, such as using the system openblas
libs, and the Julia build system gets confused. It should work,
according to the docs, but I can't even get it to a compiled stage
this way. These are the things Julia 0.6.0 downloads and builds:
ls deps/scratch/
arpack-ng-3.3.0
cmake-3.7.1-Linux-x86_64
curl-7.53.1
dsfmt-2.2.3
fftw-3.3.6-pl1-double
fftw-3.3.6-pl1-single
gmp-6.1.2
libgit2-2fcb8705e584ca61f6c4657525c9d2713f6a39d2
libssh2-30e9c1347e3b8baa2951db612f05e6d87fc8e2f2
libunwind-1.1-julia2
libuv-52d72a52cc7ccd570929990f010ed16e2ec604c8
llvm-3.9.1
mbedtls-2.3.0-gpl
mpfr-3.1.5
openblas-85636ff1a015d04d3a8f960bc644b85ee5157135
openlibm-1581174c85f7b645b15ba1ac1c3a98fb601f0fe7
openspecfun-39699a1c1824bf88410cabb8a7438af91ea98f4c
patchelf-0.9
pcre2-10.23
SuiteSparse-4.4.5
utf8proc-40e605959eb5cb90b2587fa88e3b661558fbc55a
ls deps/patches/
arpack-tests-blasint.patch llvm-3.7.1.patch llvm-D28759-loopclearance.patch
compiler-rt-3.7.1.patch llvm-3.7.1_symlinks.patch llvm-D28786-callclearance.patch
dSFMT.c.patch llvm-3.8.0_bindir.patch llvm-D9168_argument_alignment.patch
dSFMT.h.patch llvm-3.8.0_ppc64_SUBFC8.patch llvm-nodllalias.patch
gmp-exception.patch llvm-3.8.0_threads.patch llvm-PR22923.patch
instcombine-llvm-3.3.patch llvm-3.8.0_winshlib.patch llvm-PR26180.patch
int128-vector.llvm-3.3.patch llvm-3.8.1-version.patch llvm-PR27046.patch
libgit2-agent-nonfatal.patch llvm-3.9.0_cygwin.patch llvm-PR276266.patch
libgit2-free-config.patch llvm-3.9.0_D27296-libssp.patch llvm-PR277939.patch
libgit2-gitconfig-symlink.patch llvm-3.9.0_threads.patch llvm-PR278088.patch
libgit2-mbedtls.patch llvm-3.9.0_win64-reloc-dwarf.patch llvm-PR278321.patch
libgit2-mbedtls-verify.patch llvm-arm-fix-prel31.patch llvm-PR278923.patch
libgit2-mbedtls-writer-fix.patch llvm-D14260.patch llvm-PR29010-i386-xmm.patch
libgit2-remote-push-NULL.patch llvm-D17165-D18583.patch llvm-r282182.patch
libgit2-ssh.patch llvm-D17326_unpack_load.patch llvm-rL279933-ppc-atomicrmw-lowering.patch
libssh2-encryptedpem.patch llvm-D17712.patch llvm-rL293230-icc17-cmake.patch
libssh2-netinet-in.patch llvm-D21271-instcombine-tbaa-3.7.patch llvm-win64-reloc-dwarf.patch
libunwind-arm-dyn.patch llvm-D21271-instcombine-tbaa-3.8.patch mbedtls-ssl.h.patch
libunwind-arm-pc-offset.patch llvm-D23597_sdag_names.patch openblas-clangasmbug.patch
libunwind-dwarf-ver.patch llvm-D24300_ptx_intrinsics.patch openblas-cross-compile.patch
libunwind-freebsd-mapper.patch llvm-D25865-cmakeshlib.patch openblas-freebsd.patch
libunwind-prefer-extbl.patch llvm-D27389.patch openblas-power-assembly-fixes.patch
lldb-3.7.1.patch llvm-D27397.patch osx-10.10.llvm-3.3.patch
llvm-3.3.patch llvm-D27609-AArch64-UABS_G3.patch pcre-mingw.patch
llvm-3.7.0.patch llvm-D27629-AArch64-large_model.patch SuiteSparse-winclang.patch
llvm-3.7.1_2.patch llvm-D28009.patch win64-int128.llvm-3.3.patch
llvm-3.7.1_3.patch llvm-D28215_FreeBSD_shlib.patch
llvm-3.7.1_destsharedlibdir.patch llvm-D28221-avx512.patch
I mean, seriously!
As I wrote before, the test of the current Guix build probably fails due to the
openblas linkage Guix uses (openblas output does change and depends on build
choices). Not sure which switch is causing it, but it should be fixable. There
are more tests failing, however, that need fixing.
For version 7 Julia promises no longer to patch LLVM, see
https://discourse.julialang.org/t/why-is-source-build-julia-required-to-use-gpu-packages/9747/2
So, unless someone feels incensed to fix things, I propose to hold out until
Julia7 and maybe have another go again.
Pj.
Information forwarded
to
bug-guix <at> gnu.org
:
bug#30282
; Package
guix
.
(Sat, 17 Mar 2018 18:40:01 GMT)
Full text and
rfc822 format available.
Message #37 received at 30282 <at> debbugs.gnu.org (full text, mbox):
Hey Pjotr,
Pjotr Prins <pjotr.public12 <at> thebird.nl> skribis:
> ls deps/scratch/
>
> arpack-ng-3.3.0
> cmake-3.7.1-Linux-x86_64
> curl-7.53.1
> dsfmt-2.2.3
> fftw-3.3.6-pl1-double
> fftw-3.3.6-pl1-single
> gmp-6.1.2
> libgit2-2fcb8705e584ca61f6c4657525c9d2713f6a39d2
> libssh2-30e9c1347e3b8baa2951db612f05e6d87fc8e2f2
> libunwind-1.1-julia2
> libuv-52d72a52cc7ccd570929990f010ed16e2ec604c8
> llvm-3.9.1
> mbedtls-2.3.0-gpl
> mpfr-3.1.5
> openblas-85636ff1a015d04d3a8f960bc644b85ee5157135
> openlibm-1581174c85f7b645b15ba1ac1c3a98fb601f0fe7
> openspecfun-39699a1c1824bf88410cabb8a7438af91ea98f4c
> patchelf-0.9
> pcre2-10.23
> SuiteSparse-4.4.5
> utf8proc-40e605959eb5cb90b2587fa88e3b661558fbc55a
>
> ls deps/patches/
>
> arpack-tests-blasint.patch llvm-3.7.1.patch llvm-D28759-loopclearance.patch
> compiler-rt-3.7.1.patch llvm-3.7.1_symlinks.patch llvm-D28786-callclearance.patch
> dSFMT.c.patch llvm-3.8.0_bindir.patch llvm-D9168_argument_alignment.patch
> dSFMT.h.patch llvm-3.8.0_ppc64_SUBFC8.patch llvm-nodllalias.patch
> gmp-exception.patch llvm-3.8.0_threads.patch llvm-PR22923.patch
> instcombine-llvm-3.3.patch llvm-3.8.0_winshlib.patch llvm-PR26180.patch
> int128-vector.llvm-3.3.patch llvm-3.8.1-version.patch llvm-PR27046.patch
> libgit2-agent-nonfatal.patch llvm-3.9.0_cygwin.patch llvm-PR276266.patch
> libgit2-free-config.patch llvm-3.9.0_D27296-libssp.patch llvm-PR277939.patch
> libgit2-gitconfig-symlink.patch llvm-3.9.0_threads.patch llvm-PR278088.patch
> libgit2-mbedtls.patch llvm-3.9.0_win64-reloc-dwarf.patch llvm-PR278321.patch
> libgit2-mbedtls-verify.patch llvm-arm-fix-prel31.patch llvm-PR278923.patch
> libgit2-mbedtls-writer-fix.patch llvm-D14260.patch llvm-PR29010-i386-xmm.patch
> libgit2-remote-push-NULL.patch llvm-D17165-D18583.patch llvm-r282182.patch
> libgit2-ssh.patch llvm-D17326_unpack_load.patch llvm-rL279933-ppc-atomicrmw-lowering.patch
> libssh2-encryptedpem.patch llvm-D17712.patch llvm-rL293230-icc17-cmake.patch
> libssh2-netinet-in.patch llvm-D21271-instcombine-tbaa-3.7.patch llvm-win64-reloc-dwarf.patch
> libunwind-arm-dyn.patch llvm-D21271-instcombine-tbaa-3.8.patch mbedtls-ssl.h.patch
> libunwind-arm-pc-offset.patch llvm-D23597_sdag_names.patch openblas-clangasmbug.patch
> libunwind-dwarf-ver.patch llvm-D24300_ptx_intrinsics.patch openblas-cross-compile.patch
> libunwind-freebsd-mapper.patch llvm-D25865-cmakeshlib.patch openblas-freebsd.patch
> libunwind-prefer-extbl.patch llvm-D27389.patch openblas-power-assembly-fixes.patch
> lldb-3.7.1.patch llvm-D27397.patch osx-10.10.llvm-3.3.patch
> llvm-3.3.patch llvm-D27609-AArch64-UABS_G3.patch pcre-mingw.patch
> llvm-3.7.0.patch llvm-D27629-AArch64-large_model.patch SuiteSparse-winclang.patch
> llvm-3.7.1_2.patch llvm-D28009.patch win64-int128.llvm-3.3.patch
> llvm-3.7.1_3.patch llvm-D28215_FreeBSD_shlib.patch
> llvm-3.7.1_destsharedlibdir.patch llvm-D28221-avx512.patch
>
> I mean, seriously!
Yeah. :-/
> As I wrote before, the test of the current Guix build probably fails due to the
> openblas linkage Guix uses (openblas output does change and depends on build
> choices). Not sure which switch is causing it, but it should be fixable. There
> are more tests failing, however, that need fixing.
Indeed there’s always the possibility that test failures are due to a
missing patch.
> For version 7 Julia promises no longer to patch LLVM, see
>
> https://discourse.julialang.org/t/why-is-source-build-julia-required-to-use-gpu-packages/9747/2
>
> So, unless someone feels incensed to fix things, I propose to hold out until
> Julia7 and maybe have another go again.
That sounds reasonable.
It’s a bit weird that 0.6.0 tests passed at some point in Guix, and
eventually started failing. Not sure what happened.
Ludo’.
Information forwarded
to
bug-guix <at> gnu.org
:
bug#30282
; Package
guix
.
(Mon, 19 Mar 2018 19:15:02 GMT)
Full text and
rfc822 format available.
Message #40 received at 30282 <at> debbugs.gnu.org (full text, mbox):
On Sat, Mar 17, 2018 at 07:39:28PM +0100, Ludovic Courtès wrote:
> It’s a bit weird that 0.6.0 tests passed at some point in Guix, and
> eventually started failing. Not sure what happened.
Probably an openblas or LLVM update. Unfortunately hydra no longer has
the logs.
Pj.
--
Information forwarded
to
bug-guix <at> gnu.org
:
bug#30282
; Package
guix
.
(Mon, 05 Oct 2020 21:38:02 GMT)
Full text and
rfc822 format available.
Message #43 received at 30282 <at> debbugs.gnu.org (full text, mbox):
Dear,
On Sun, 28 Jan 2018 at 23:43, Marco van Hulten <marco <at> hulten.org> wrote:
> Building julia ends like badly:
[...]
> `/gnu/store/zkx3jjnqg043yd3k2kl3lgw57rx39vmy-julia-0.6.0.drv' failed
Does this more-than-2-years-old bug report still make sense? Because
now, Julia v1.4.1 is included in Guix.
I am in favor to close it. WDYT?
All the best,
simon
Reply sent
to
Ludovic Courtès <ludo <at> gnu.org>
:
You have taken responsibility.
(Tue, 06 Oct 2020 11:58:01 GMT)
Full text and
rfc822 format available.
Notification sent
to
Marco van Hulten <marco <at> hulten.org>
:
bug acknowledged by developer.
(Tue, 06 Oct 2020 11:58:01 GMT)
Full text and
rfc822 format available.
Message #48 received at 30282-done <at> debbugs.gnu.org (full text, mbox):
Hi,
zimoun <zimon.toutoune <at> gmail.com> skribis:
> On Sun, 28 Jan 2018 at 23:43, Marco van Hulten <marco <at> hulten.org> wrote:
>
>> Building julia ends like badly:
>
> [...]
>
>
>> `/gnu/store/zkx3jjnqg043yd3k2kl3lgw57rx39vmy-julia-0.6.0.drv' failed
>
> Does this more-than-2-years-old bug report still make sense? Because
> now, Julia v1.4.1 is included in Guix.
>
> I am in favor to close it. WDYT?
Agreed. Closing!
Ludo’.
bug archived.
Request was from
Debbugs Internal Request <help-debbugs <at> gnu.org>
to
internal_control <at> debbugs.gnu.org
.
(Tue, 03 Nov 2020 12:24:08 GMT)
Full text and
rfc822 format available.
This bug report was last modified 3 years and 166 days ago.
Previous Next
GNU bug tracking system
Copyright (C) 1999 Darren O. Benham,
1997,2003 nCipher Corporation Ltd,
1994-97 Ian Jackson.