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#22768
Crash safety
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(Mon, 22 Feb 2016 16:02:02 GMT)
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(Mon, 22 Feb 2016 16:02:02 GMT)
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Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):
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Hi gzip developers,
Gzip version: 1.6
I am developing a tool to validate crash safety of application software. I have just found that the file deletion has a potential safety venerability: if only a prefix of I/O operations are flushed to disk, after reboot, the file-system would only contain a 0-byte file (the data is not reached to disk yet).
A paper FYI: http://0b4af6cdc2f0c5998459-c0245c5c937c5dedcca3f1764ecc9b2f.r43.cf2.rackcdn.com/17780-osdi14-paper-pillai.pdf <http://0b4af6cdc2f0c5998459-c0245c5c937c5dedcca3f1764ecc9b2f.r43.cf2.rackcdn.com/17780-osdi14-paper-pillai.pdf> (Table 1 on Page 440). Data append can be (virtually) reordered with any operation at default ext3 and ext4 settings. I recommend to use fsync() to persist the .gz file before deletion.
— strace log —
36 open("a", O_RDONLY|O_NOCTTY|O_NONBLOCK|O_LARGEFILE|O_NOFOLLOW) = 3
37 fstat64(3, {st_mode=S_IFREG|0664, st_size=19730, ...}) = 0
38 rt_sigprocmask(SIG_BLOCK, [HUP INT PIPE TERM XCPU XFSZ], [], 8) = 0
39 open("a.gz", O_WRONLY|O_CREAT|O_EXCL|O_LARGEFILE, 0600) = 4
40 rt_sigprocmask(SIG_SETMASK, [], NULL, 8) = 0
41 read(3, "10017649652034232324895361757801"..., 65536) = 19730
42 read(3, "", 45806) = 0
43 write(4, "\37\213\10\10\24\312\312V\0\3a\0-\334m\226\234\274\22\3\340\377Y\r \30l\354\375o,z\324"..., 9954) = 9954
44 close(3) = 0
45 utimensat(4, NULL, {{1456130580, 76955623}, {1456130580, 128955620}}, 0) = 0
46 fchown32(4, 1000, 1000) = 0
47 fchmod(4, 0664) = 0
48 close(4) = 0
49 rt_sigprocmask(SIG_BLOCK, [HUP INT PIPE TERM XCPU XFSZ], [], 8) = 0
50 unlink("a") = 0
Thank you for your attention!
Regards,
Yanyan Jiang 蒋炎岩
Institute of Computer Software,
Dept. of Computer Science, Nanjing University
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Merged 22768 22770.
Request was from
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(Tue, 23 Feb 2016 07:17:01 GMT)
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(Tue, 23 Feb 2016 07:29:02 GMT)
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Message #12 received at 22768-done <at> debbugs.gnu.org (full text, mbox):
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Thanks for reporting the problem. It's annoying that gzip must invoke fsync, as
that's way overkill compared to the write-ordering that is needed and fsync will
slow gzip down, but I don't see any safe and reasonably portable alternative so
I installed the attached patch on Savannah, here:
http://git.savannah.gnu.org/cgit/gzip.git/commit/?id=22aac8f8a616a72dbbe0e4119db8ddda0f076c04
[0001-fsync-output-file-before-closing.txt (text/plain, attachment)]
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(Tue, 23 Feb 2016 07:29:02 GMT)
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(Fri, 26 Feb 2016 11:30:02 GMT)
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Message #20 received at 22768 <at> debbugs.gnu.org (full text, mbox):
Paul Eggert wrote:
> Thanks for reporting the problem. It's annoying that gzip must invoke
> fsync, as that's way overkill compared to the write-ordering that is
> needed and fsync will slow gzip down, but I don't see any safe and
> reasonably portable alternative
I 100% agree.
I am considering a different approach for lzip; adding a new option, say
'-y, --fsync', to call fsync when acting in-place. This provides safety
to those needing it without slowing down the work of everybody else.
Especially of those (de)compressing a lot of replaceable files in-place.
(Ddrescue provides the option '-y, --synchronous' because calling fsync
by default is too slow).
What do you think?
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(Fri, 26 Feb 2016 11:54:02 GMT)
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Message #23 received at 22768 <at> debbugs.gnu.org (full text, mbox):
Antonio Diaz Diaz wrote:
> I am considering a different approach for lzip; adding a new option, say '-y,
> --fsync', to call fsync when acting in-place. This provides safety to those
> needing it without slowing down the work of everybody else. Especially of those
> (de)compressing a lot of replaceable files in-place.
Yes, I considered an --fsync option as well, but worried about making the
default unsafe. How about if gzip and lzip instead add a --no-fsync option for
people who don't need the safety?
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(Fri, 26 Feb 2016 12:30:02 GMT)
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Message #26 received at 22768 <at> debbugs.gnu.org (full text, mbox):
Paul Eggert wrote:
> Yes, I considered an --fsync option as well, but worried about making
> the default unsafe. How about if gzip and lzip instead add a --no-fsync
> option for people who don't need the safety?
I think it is a good idea. The people who know that don't need the
safety are probably the most inclined to read the documentation.
Is it ok to use '-y' as short option name?
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(Fri, 26 Feb 2016 21:29:01 GMT)
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Message #29 received at 22768 <at> debbugs.gnu.org (full text, mbox):
On 02/26/2016 04:34 AM, Antonio Diaz Diaz wrote:
> Is it ok to use '-y' as short option name?
Why -y? And why a short name at all? I don't expect this to be
something that people will want to type by hand.
Come to think of it, gzip should also do an fsync, or at least an
fdatasync, on the destination's directory before removing the source.
And this suggests that any long option name shouldn't be something
syscall-specific like '--no-fsync', but should instead be something more
general and easy to remember, e.g., '--hasty'.
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(Sat, 27 Feb 2016 00:13:01 GMT)
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Message #32 received at 22768 <at> debbugs.gnu.org (full text, mbox):
Paul Eggert wrote:
> Why -y? And why a short name at all? I don't expect this to be
> something that people will want to type by hand.
Because ddrescue already provides the option '-y, --synchronous' for a
somewhat similar functionality. (It is in my first message). I find
short option names handy, but I have no problem implementing this as
long-only.
> Come to think of it, gzip should also do an fsync, or at least an
> fdatasync, on the destination's directory before removing the source.
Doing it right in all circumstances may be impossible. Also fsync may be
a no-op in some systems and very expensive in others. And some systems
are safe without the need of fsync. This is why my first idea was to
leave the safety to the system by default and add an option to enable
the "maybe safer but slower" behavior.
> And this suggests that any long option name shouldn't be something
> syscall-specific like '--no-fsync', but should instead be something more
> general and easy to remember, e.g., '--hasty'.
I had to search 'hasty' in the dictionary, so I think it is perhaps not
so good and easy to remember for non-English speakers. OTOH, many people
using a CLI know what 'fsync' or 'sync' mean.
Just now my preference is to make the behavior optional and call the
option --fsync. I think both points meet the principle of least surprise.
Best regards,
Antonio.
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(Sat, 27 Feb 2016 00:46:01 GMT)
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Message #35 received at 22768 <at> debbugs.gnu.org (full text, mbox):
Antonio Diaz Diaz wrote:
> Just now my preference is to make the behavior optional and call the
> option --fsync. I think both points meet the principle of least surprise.
An additional reason to make the behavior optional is that people find
the performance penalty of fsync so annoying that they even write
libraries to disable it[1].
"This package contains a small LD_PRELOAD library (libeatmydata) and a
couple of helper utilities designed to transparently disable fsync and
friends (like open(O_SYNC)). This has two side-effects: making software
that writes data safely to disk a lot quicker and making this software
no longer crash safe."
[1] http://packages.debian.org/testing/utils/eatmydata
Best regards,
Antonio.
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(Sat, 27 Feb 2016 00:48:01 GMT)
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Message #38 received at 22768 <at> debbugs.gnu.org (full text, mbox):
Antonio Diaz Diaz wrote:
> Paul Eggert wrote:
> >And this suggests that any long option name shouldn't be something
> >syscall-specific like '--no-fsync', but should instead be something more
> >general and easy to remember, e.g., '--hasty'.
>
> I had to search 'hasty' in the dictionary, so I think it is perhaps not so
> good and easy to remember for non-English speakers. OTOH, many people using
> a CLI know what 'fsync' or 'sync' mean.
Worse is that one program chooses "hasty". Another chooses "quick".
Another "hurried", "fast", "rapid", "swift". It becomes impossible to
remember what each program uses. Keeping to what it does seems least
surprising and in this case it is either --fsync or --sync.
> Just now my preference is to make the behavior optional and call the option
> --fsync. I think both points meet the principle of least surprise.
I would much prefer the above of an option to enable it rather than
one to disable it. Otherwise I have to go through workarounds to
avoid it in order to have the performance that used to be the default.
It has been many decades with the cached behavior and apparently
without significant issues due to it. Large changes should be made
slowly as an option rather than abruptly as the default.
Bob
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(Sat, 27 Feb 2016 15:42:02 GMT)
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Message #41 received at 22768 <at> debbugs.gnu.org (full text, mbox):
Bob Proulx wrote:
>> Just now my preference is to make the behavior optional and call the option
>> --fsync. I think both points meet the principle of least surprise.
>
> I would much prefer the above of an option to enable it rather than
> one to disable it. Otherwise I have to go through workarounds to
> avoid it in order to have the performance that used to be the default.
After thinking about it, I think that the right thing to do is to not
implement any kind of fsync functionality in gzip/lzip.
First, it may be a cause of feature creep. If gzip fsyncs the output
file it might also test it, or even compare it with the input file,
before deleting the input file.
Second, as doing it right in all circumstances may be impossible, it may
become an endless source of bug reports. (fsyncing also the
destination's directory, opening the output with O_DIRECT,...).
Third, it fights against other layers of the system, like the
filesystem, instead of collaborating with them.
Fourth, it fights against user's wishes instead of obeying them. If the
user chooses a fast-but-unsafe configuration for the filesystem, gzip
should not try to circumvent the user's choice, because gzip does not
know if the file being compressed is worth the trouble or not.
I think that the best way of guarding an important file against all bugs
and crashes is a extended version of the procedure already documented in
the manual of lzip:
1) gzip --keep file # don't delete input
2) sync # commit output and directory to disk
3) zcmp file file.gz # verify output
4) rm file # then remove input
Best regards,
Antonio.
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(Sun, 28 Feb 2016 08:28:02 GMT)
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Message #44 received at 22768 <at> debbugs.gnu.org (full text, mbox):
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Antonio Diaz Diaz wrote:
> ddrescue already provides the option '-y, --synchronous' for a somewhat
> similar functionality.
OK, let's do it as --synchronous, long-only. If the need keeps growing we can
add -y.
> Just now my preference is to make the behavior optional
On second thought, as Bob Proulx suggested, this is a better approach. I tried
the a synchronous gzip on a contrived example (compressing 1000 empty files on
an ext4 file system on an actual hard drive with options relatime, seclabel,
data=ordered) and synchronizing made gzip 700x slower. Most people will prefer
the old behavior, where gzip is faster and is unsafe mostly just in theory.
I'm attaching the patches I installed recently in this area, to help fix this
problem. I'll follow up on your other recent email in another message soon.
[0001-gzip-fdatasync-output-dir-before-unlinking.patch (text/x-diff, attachment)]
[0002-gzip-use-constants-not-fileno.patch (text/x-diff, attachment)]
[0003-gzip-new-option-synchronous.patch (text/x-diff, attachment)]
[0004-misc-update-version-copyright.patch (text/x-diff, attachment)]
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(Sun, 28 Feb 2016 08:32:02 GMT)
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Message #47 received at 22768 <at> debbugs.gnu.org (full text, mbox):
Antonio Diaz Diaz wrote:
> it may be a cause of feature creep. If gzip fsyncs the output file it
> might also test it, or even compare it with the input file, before deleting the
> input file.
Feature creep is something we should avoid. Here, though, it's a real pain to
synchronize correctly and many people will get it wrong. (See my commentary at
the end of this email for one example of getting it wrong.) By comparison,
comparing the decompressed output with the input file is something that most
people will probably get right, so it's less useful to add a gzip option for that.
> Second, as doing it right in all circumstances may be impossible
Sure, as some file systems do not support fsync. Still, gzip should do what it can.
> it may become an endless source of bug reports.
I doubt it. gzip has run unsafely for decades, and this is the first bug report
about it -- one discovered by code inspection, not by actual failure.
> (fsyncing also the destination's directory,
Yes, that needs fixing. Done in the patches I just now emailed to you.
> opening the output with O_DIRECT,...).
I doubt whether that feature will be needed or useful for gzip.
> Third, it fights against other layers of the system, like the filesystem,
> instead of collaborating with them.
True, fsync is a bad design. But that is no excuse for gzip losing data.
> Fourth, it fights against user's wishes instead of obeying them.
This should not be a problem if --synchronous is a new option, defaulting to the
old (unsynchronized) behavior.
> I think that the best way of guarding an important file against all bugs and
> crashes is a extended version of the procedure already documented in the manual
> of lzip:
>
> 1) gzip --keep file # don't delete input
> 2) sync # commit output and directory to disk
> 3) zcmp file file.gz # verify output
> 4) rm file # then remove input
That approach does not suffice, because 'sync' does not guarantee that the
output data has been synchronized to disk. See:
http://pubs.opengroup.org/onlinepubs/9699919799/functions/sync.html
With GNU 'sync' there is a workaround, but it is not portable to non-GNU
systems; besides, the workaround is not obvious.
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(Mon, 29 Feb 2016 17:08:01 GMT)
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Message #50 received at 22768 <at> debbugs.gnu.org (full text, mbox):
Paul Eggert wrote:
> Feature creep is something we should avoid. Here, though, it's a real
> pain to synchronize correctly and many people will get it wrong.
The problem is that it is impossible to get it right unless one does
something as extreme as unmounting-then-remounting the filesystem, or
even making a backup copy on a removable device and then verifying the
copy on a different computer.
> Sure, as some file systems do not support fsync. Still, gzip should do
> what it can.
I am not so sure. There seems to be an arms race between tools that do
what they can and ways of preventing those tools from doing it. Just
search for "disable fsync".
Even if invoked optionally, all this complication to perhaps achieve
nothing but a false sense of safety goes against my KISS philosophy.
Imagine if some backup tool begins calling 'gzip --synchronous', and
users are forced to install libeatmydata to disable it.
>> it may become an endless source of bug reports.
>
> I doubt it. gzip has run unsafely for decades, and this is the first
> bug report about it -- one discovered by code inspection, not by actual
> failure.
Publish or perish may be the cause of such an endless source of bug
reports. The next one might be titled "On why 'gzip --synchronous' does
not work on some filesystems".
>> (fsyncing also the destination's directory,
>
> Yes, that needs fixing. Done in the patches I just now emailed to you.
Thanks. But I was not asking for a fix. Just pointing out what others
might ask.
> True, fsync is a bad design. But that is no excuse for gzip losing data.
As I see it, it is not gzip the one losing the data, but the filesystem
that does not respect the write order, or even the user that chose such
filesystem (perhaps because of a good reason).
>> 1) gzip --keep file # don't delete input
>> 2) sync # commit output and directory to disk
>> 3) zcmp file file.gz # verify output
>> 4) rm file # then remove input
>
> That approach does not suffice, because 'sync' does not guarantee that
> the output data has been synchronized to disk.
I know, but how can you guarantee that 'gzip --synchronous' will work on
a system where the 'sync' above does not even guarantee that 'file.gz'
is written to disk before 'file' is deleted?
I still think that the right thing to do is to not implement any kind of
fsync functionality in gzip/lzip, and achieve permanence (when it is
needed) by some other means. As you said, gzip has run unsafely for
decades without a failure.
Best regards,
Antonio.
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Message #53 received at 22768 <at> debbugs.gnu.org (full text, mbox):
On 02/29/2016 09:12 AM, Antonio Diaz Diaz wrote:
>>> 1) gzip --keep file # don't delete input
>>> 2) sync # commit output and directory to disk
>>> 3) zcmp file file.gz # verify output
>>> 4) rm file # then remove input
>>
>> That approach does not suffice, because 'sync' does not guarantee
>> that the output data has been synchronized to disk.
>
> I know, but how can you guarantee that 'gzip --synchronous' will work
> on a system where the 'sync' above does not even guarantee that
> 'file.gz' is written to disk before 'file' is deleted?
Yes, I can guarantee that 'gzip --synchronous' will not lose data on any
system conforming to POSIX with the Synchronized Input and Output
option. No such guarantee can be made for the above shell script,
because the 'sync' command does not make the same guarantees that the
'fsync' function does. Putting the above shell script into the
documentation would give users a false sense of security. (Or maybe we
should put the above shell script into the documentation as an example
of what *not* to do. :-)
> The next one might be titled "On why 'gzip --synchronous' does not
> work on some filesystems".
:-) Of course the problem can still exist on file systems that do not
conform to POSIX, and there are many of those. Still, there are people
who take these things seriously, and who use file systems that are safe
in the presence of crashes, and for these people grep --synchronous
should work.
> As you said, gzip has run unsafely for decades without a failure.
I did not say that! And I am skeptical that it's true. I think it's
quite possible that gzip has lost data when an operating system crashed
at the wrong moment.
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(Tue, 01 Mar 2016 18:08:01 GMT)
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Message #56 received at 22768 <at> debbugs.gnu.org (full text, mbox):
Paul Eggert wrote:
>> I know, but how can you guarantee that 'gzip --synchronous' will work
>> on a system where the 'sync' above does not even guarantee that
>> 'file.gz' is written to disk before 'file' is deleted?
>
> Yes, I can guarantee that 'gzip --synchronous' will not lose data on any
> system conforming to POSIX with the Synchronized Input and Output
> option.
Unless someone has somehow disabled fsync, I guess. :-)
I am not questioning you. You know very well what you do. It is simply
that I find the situation so chaotic that I think maybe better methods
to ensure data permanence have yet to be developed.
> Still, there are people who take these things seriously, and who use
> file systems that are safe in the presence of crashes, and for these
> people grep --synchronous should work.
What I ask myself is, are those people better served by adding
--synchronous options to every tool, or by using a crash-tolerant file
system[1]?
"At the ACM Symposium on Operating Systems Principles in October, MIT
researchers will present the first file system that is mathematically
guaranteed not to lose track of data during crashes."
[1] http://news.mit.edu/2015/crash-tolerant-data-storage-0824
>> As you said, gzip has run unsafely for decades without a failure.
>
> I did not say that!
Sorry, I meant "without a reported failure".
My point is that if gzip has run unsafely for decades without a reported
failure, maybe all those who take these things seriously are already
using file systems safe enough to guarantee that well behaved tools like
gzip do not lose data.
Best regards,
Antonio.
(No need to CC me. I am subscribed to bug-gzip).
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Message #59 received at 22768 <at> debbugs.gnu.org (full text, mbox):
On 03/01/2016 10:13 AM, Antonio Diaz Diaz wrote:
> [1] http://news.mit.edu/2015/crash-tolerant-data-storage-0824
FSCQ is not even close to ready for prime-time, I'm afraid. Its
prototype is slow compared to conventional file systems (it assumes a
single-threaded kernel, it issues many more writes than ext4 does to
implement a commit, its has been publicly tested only on flash drives,
etc.). The FSQC authors would like to add support for fsync/fdatasync to
get some of that performance back, which seems reasonable -- but at that
point, applications like gzip would still need to call fsync/fdatasync
to avoid losing data.
You may well be right that eventually file system designers will figure
this stuff out so that well-written POSIX applications will not lose
data even if they don't use fsync/fdatasync. However, if FSCQ is any
indication, we're many years away from that. In the meantime
fsync/fdatasync is all we have.
> My point is that if gzip has run unsafely for decades without a
> reported failure, maybe all those who take these things seriously are
> already using file systems safe enough to guarantee that well behaved
> tools like gzip do not lose data.
That will be true for many users. Still, I imagine that non-experts
would have a good deal of trouble connecting the dots between lost data
and any gzip invocation that lost the data, and could chalk it up to a
system crash losing data for other reasons. (After all, things are
somewhat chaotic during a crash...) One can find examples on the net
like "How to recover lost/deleted Gzip compressed gz file" (this is for
BYclouder, a commercial tool) that talk about system crashes, and which
indicate (though do not prove) that a real problem exists with gzip.
My sources:
Chen H, Ziegler D, Chajed T, Chlipapa A, Kaashoek MF, Zeldovich N. Using
Crash Hoare logic for certifying the FSCQ file system. SOSP 2015.
https://people.csail.mit.edu/nickolai/papers/chen-fscq.pdf
How to recover lost/deleted Gzip compressed gz file. BYclouder.
2013-04-23.
http://www.byclouder.com/help/recovery/file/archive/how-to-recover-gzip-gz.html
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Message #62 received at 22768 <at> debbugs.gnu.org (full text, mbox):
Paul Eggert wrote:
> You may well be right that eventually file system designers will figure
> this stuff out so that well-written POSIX applications will not lose
> data even if they don't use fsync/fdatasync. However, if FSCQ is any
> indication, we're many years away from that. In the meantime
> fsync/fdatasync is all we have.
Thanks for the explanation. I have already started the last round of
release candidates of the lzip family, but just after releasing
lzip-1.18, in a month or so, i'll implement --synchronous in a way
compatible with what you implement in gzip.
Best regards,
Antonio.
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This bug report was last modified 7 years and 325 days ago.
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